PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001014.1_g00016.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 432aa    MW: 47276.4 Da    PI: 9.3849
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001014.1_g00016.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.2e-056587123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ++C++C+k F r  nL+ H r H
  Itr_sc001014.1_g00016.1 65 FVCEICNKGFQRDQNLQLHRRGH 87
                             89*******************88 PP

2zf-C2H212.10.00059142164123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              +kC +C+k++  +s+ k H + +
  Itr_sc001014.1_g00016.1 142 WKCDKCSKRYAVQSDWKAHSKIC 164
                              58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.91E-86487No hitNo description
Gene3DG3DSA:3.30.160.601.4E-56487IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9496587IPR007087Zinc finger, C2H2
SMARTSM003550.0176587IPR015880Zinc finger, C2H2-like
PfamPF121716.7E-56587IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
SMARTSM0035578107137IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.0E-5130163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.91E-8137162No hitNo description
SMARTSM00355140142162IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MIKGMVVDES MSNLTSASNE ASISSTSNNP AQPAAKKKRN LPGNPDPEAE VVALSPRTLL  60
ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRNKQE VIKKKVYVCP ETSCVHHDPS  120
RALGDLTGIK KHYSRKHGEK KWKCDKCSKR YAVQSDWKAH SKICGTREYR CDCGTLFSRR  180
DSFITHRAFC DALAEESVRA ISAPTNNPLL SSHIALQQPF PVLKQEPPPL PSFRPLRAAA  240
QPELPPWLAC PPQAAGPSSA AADLSAQLFG NIHENPNMSA TALLQKAAQM GVTSSTNNNN  300
LVGAASGNVI GPHQGPVHMS APAGGFFSEE LALASFGVPN KPQTHHANLT SGCMETSLTA  360
PSPHRNMIIN SASTRDFLTL GAFPHHQRDT FLNMASIDHM PPPSSSSSSF DHLNQNQNLN  420
QNHNQNQPPW LN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081678.11e-139PREDICTED: zinc finger protein NUTCRACKER-like isoform X1
RefseqXP_011081677.11e-139PREDICTED: zinc finger protein NUTCRACKER-like isoform X1
SwissprotQ8H1F51e-118IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLB9HDE11e-136B9HDE1_POPTR; Uncharacterized protein
TrEMBLF6H3N11e-135F6H3N1_VITVI; Putative uncharacterized protein
STRINGVIT_04s0008g01160.t011e-135(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-114indeterminate(ID)-domain 7